Basic Information
Locus ID:
jg24021
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17513193 | 17517133 | + | jg24021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 65,490.79 Da | 35.41 | 99.28 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 461 | 557 | 1.46524E-24 | - |
| CDD | cd00030 | C2 | 283 | 383 | 7.34864E-23 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 91 | 267 | 1.8E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 459 | 552 | 6.1E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 281 | 383 | 2.2E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 458 | 576 | 7.83E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 279 | 407 | 9.68E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 457 | 582 | 3.3E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 279 | 408 | 1.4E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 460 | 559 | 3.7E-19 | IPR000008 |
| SMART | SM00239 | C2_3c | 282 | 380 | 1.0E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 86 | 268 | 29.818975 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 440 | 559 | 20.080006 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 264 | 381 | 19.462158 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011081537.1 | synaptotagmin-5 [Sesamum indicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A830CWA6 | Synaptotagmin-4 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002189500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology