Basic Information
Locus ID:
jg23977
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Peroxisome biogenesis factor 10
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17181308 | 17185676 | - | jg23977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 43,655.04 Da | 53.45 | 81.06 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16527 | RING-HC_PEX10 | 340 | 379 | 1.74539E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 340 | 384 | 3.1E-9 | - |
| Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 47 | 280 | 4.2E-45 | IPR006845 |
| SUPERFAMILY | SSF57850 | RING/U-box | 340 | 384 | 1.5E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 391 | 1.7E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 341 | 378 | 9.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 341 | 379 | 13.315446 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 356 | 365 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26350.1 | peroxin 10. Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis. | 0 |
| RefSeq | XP_011081625.1 | peroxisome biogenesis factor 10 isoform X1 [Sesamum indicum] | 0 |
| Q9SYU4 | Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana OX=3702 GN=PEX10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G7Y6 | Putative E3 ubiquitin ligase, integral peroxisomal membrane protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26072 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23977, jg36624 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034456 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20389, Sbi_jg23397 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17172 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009058 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63615, Sgl68106 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018644, gene:ENSEOMG00000018743 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0013640, CQ.Regalona.r1.2BG0015740 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30261020 |
| Apiaceae | Apium graveolens | 1 | Ag7G01152 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G001300, COCNU_05G008860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712719 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1214.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G10655 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002014m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g07000.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g024690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2136 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2280 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g01270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0705s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g25700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.680 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05058 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3664, CH03.4109, CH03.4191 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0576590, gene-QOZ80_7BG0608040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0126010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039750 |
| Poaceae | Oryza coarctata | 2 | Oco13G012380, Oco14G013120 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g41800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G346600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306247, Pt_Chr0306300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G015490, Chr28G011390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G335400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG021750, gene_TRIDC2BG026280 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G171700.1, TraesCS2D02G179200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb108960_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32916 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5531 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2249, evm.TU.LG07.1320 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.764 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30275, nbisL1-mrna-30287 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19719 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.447 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015423 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4366 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15041 |
| Salicaceae | Populus euphratica | 1 | populus_peu12590 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635970 |
| Solanaceae | Solanum chilense | 2 | SOLCI003785300, SOLCI003986300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15519_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1455 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25550.v3.1 |