Basic Information
Locus ID:
jg23952
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17043102 | 17051863 | - | jg23952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 124,621.89 Da | 47.65 | 82.03 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 102 | 238 | 3.30966E-40 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 487 | 548 | 8.9E-7 | IPR001245 |
| Pfam | PF04124 | Dor1-like family | 883 | 1066 | 4.1E-65 | IPR007255 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 462 | 645 | 3.29E-29 | IPR011009 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 933 | 1078 | 1.46E-12 | IPR016159 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 102 | 225 | 2.34E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 547 | 649 | 1.1E-14 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 86 | 218 | 5.1E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 451 | 546 | 1.7E-21 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 310 | 656 | 8.965916 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 416 | 464 | - | - |
| Coils | Coil | Coil | 384 | 404 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_051136957.1 | U-box domain-containing protein 34-like [Andrographis paniculata] | 0 |
| Q84K25 | Conserved oligomeric Golgi complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=COG8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498J8H8 | Conserved oligomeric Golgi complex subunit 8 OS=Malus domestica OX=3750 GN=DVH24_020469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for jg23952.