Basic Information
Locus ID:
jg23950
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17020760 | 17023771 | - | jg23950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 57,972.74 Da | 45.71 | 91.49 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 350 | 480 | 1.86551E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 141 | 339 | 3.04819E-137 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 363 | 471 | 9.9E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 162 | 323 | 2.2E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 206 | 491 | 8.54E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 346 | 510 | 3.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 128 | 345 | 2.7E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 156 | 353 | 3.7E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 390 | 471 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 168 | 338 | 29.327271 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 349 | 510 | 26.02972 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 137 | 165 | 10.896802 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 284 | 292 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_011100200.1 | eukaryotic initiation factor 4A-14 [Sesamum indicum] | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2Z7CXS1 | Eukaryotic initiation factor 4A-15-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_06903 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology