Basic Information
Locus ID:
jg23867
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 16426693 | 16427841 | - | jg23867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 42,696.68 Da | 52.36 | 65.84 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 223 | 8.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 265 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 313 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 91 | 352 | 1.04E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 185 | 1.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 378 | 5.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 180 | 224 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 122 | 9.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 314 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 266 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 162 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 234 | 265 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 234 | 265 | 10.100143 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 229 | 8.992876 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18950.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_012857762.1 | PREDICTED: myosin heavy chain kinase B-like [Erythranthe guttata] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HZU2 | WD40 repeat-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04254 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology