Basic Information
Locus ID:
jg23782
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box only protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 15711470 | 15712756 | + | jg23782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 48,157.40 Da | 60.69 | 80.12 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 66 | 7.1E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 85 | 1.44E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 146 | 392 | 4.32E-7 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 80 | 3.0E-9 | - |
| SMART | SM00256 | fbox_2 | 33 | 73 | 4.6E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 27 | 72 | 11.802483 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33160.1 | F-box family protein. | 0 |
| RefSeq | XP_011081957.1 | F-box only protein 13 [Sesamum indicum] | 0 |
| Q9SMZ3 | F-box only protein 13 OS=Arabidopsis thaliana OX=3702 GN=FBX13 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9TLU4 | F-box only protein 13 OS=Sesamum indicum OX=4182 GN=LOC105164853 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23782 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007970, COCNU_13G001750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702567, gene-LOC103714860 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1393.V1.1, AsparagusV1_07.3671.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G33160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025320m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g086170.2N, BniB05g004880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1768 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1895 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g03570, gene.Cymno03g11230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-213 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.716 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028784 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3373, AH03.3702, BH03.3983, CH01.3964, CH03.4249 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0251370, gene-QOZ80_3BG0276680 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0124820.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_037729, gene-QYE76_039679, gene-QYE76_067439 |
| Poaceae | Oryza coarctata | 4 | Oco05G015390, Oco06G015910, Oco13G012750, Oco14G013470 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g28130.1, LOC_Os07g42590.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G337500, gene-BS78_02G351000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G024590, Chr24G015210, Chr28G011720 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G328700, Tel2E01G328900, Tel4E01G146600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG021230, gene_TRIDC2BG025200 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G167400.1.cds1, TraesCS2B02G193700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb109360_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12067, nbis-gene-32960, nbis-gene-368 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1053, Zma_g5563, Zma_g6859 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g26200, gene.Posoc02g27790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.634 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13853 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12093 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8890 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014614 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18300 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8075 |
| Salicaceae | Populus euphratica | 3 | populus_peu12551, populus_peu38147, populus_peu38267 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635750 |
| Solanaceae | Solanum chilense | 1 | SOLCI000144900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028012 |
| Zosteraceae | Zostera marina | 3 | Zosma01g05100.v3.1, Zosma03g16290.v3.1, Zosma04g19540.v3.1 |