Basic Information
Locus ID:
jg23675
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14765057 | 14769178 | - | jg23675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 41,004.64 Da | 42.37 | 77.72 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 303 | 351 | 4.0E-11 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 42 | 252 | 2.09E-24 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 299 | 359 | 9.71E-17 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 282 | 366 | 6.0E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 41 | 257 | 7.9E-11 | IPR027267 |
| SMART | SM00326 | SH3_2 | 299 | 354 | 1.6E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 296 | 355 | 20.823627 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 290 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_011082136.1 | SH3 domain-containing protein 1 [Sesamum indicum] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H7Y0 | Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation OS=Handroanthus impetiginosus OX=429701 GN=CDL12_13761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology