Basic Information
Locus ID:
jg23624
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14357612 | 14358955 | + | jg23624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 50,982.55 Da | 44.95 | 96.98 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 58 | 9.9E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 85 | 2.22E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 60 | 6.7E-10 | - |
| SMART | SM00256 | fbox_2 | 24 | 64 | 5.5E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 312 | 1.5E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 63 | 10.027357 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_012837298.1 | PREDICTED: F-box only protein 8-like [Erythranthe guttata] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A022RCV0 | F-box domain-containing protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a022761mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23624 |
| Plantaginaceae | Plantago ovata | 14 | Pov_00000996, Pov_00008667, Pov_00008668, Pov_00011224 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12898 |