Basic Information
Locus ID:
jg23612
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14278557 | 14280807 | + | jg23612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 47,407.89 Da | 48.65 | 81.29 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 366 | 401 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 316 | 0.0088 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 264 | 7.1E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 149 | 206 | 4.2E-7 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 410 | 4.52E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 59 | 404 | 9.3E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 226 | 265 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 222 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 401 | 3.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 359 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 316 | 0.0011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 264 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 402 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 182 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 182 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 369 | 402 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 264 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 388 | 402 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 101 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_011092602.1 | cell division cycle 20.1, cofactor of APC complex-like [Sesamum indicum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UEJ3 | cell division cycle 20.1, cofactor of APC complex-like OS=Sesamum indicum OX=4182 GN=LOC105172739 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology