Basic Information
Locus ID:
jg23605
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14224567 | 14236156 | + | jg23605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 184,978.39 Da | 49.48 | 81.46 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 1193 | 1248 | 2.68339E-31 | - |
| CDD | cd06174 | MFS | 23 | 382 | 5.06835E-15 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 1258 | 1621 | 1.7E-35 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 1212 | 1247 | 2.4E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 962 | 1071 | 2.3E-11 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 1181 | 1250 | 5.5E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 1115 | 1621 | 4.35E-76 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1117 | 1638 | 2.3E-255 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 897 | 1060 | 1.6E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1412 | 1587 | 2.3E-255 | - |
| SMART | SM00439 | BAH_4 | 959 | 1075 | 7.2E-25 | IPR001025 |
| SMART | SM00298 | chromo_7 | 1193 | 1252 | 1.5E-7 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 1262 | 1618 | 1.4E-29 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 1115 | 1628 | 46.344135 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 1194 | 1247 | 11.616301 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 959 | 1075 | 17.68335 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 1217 | 1237 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 1264 | 1276 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1116 | 1132 | 9.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1307 | 1321 | 9.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1353 | 1366 | 9.4E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 720 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_011092593.1 | DNA (cytosine-5)-methyltransferase CMT2 [Sesamum indicum] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6I9U4N8 | Cytosine-specific methyltransferase OS=Sesamum indicum OX=4182 GN=LOC105172733 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology