Basic Information
Locus ID:
jg2340
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 2246494 | 2250824 | + | jg2340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 49,673.72 Da | 38.94 | 77.86 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 177 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 298 | 0.091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 337 | 2.1E-4 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 111 | 131 | 1.1E-7 | IPR041367 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 423 | 1.65E-42 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 107 | 132 | 4.19E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 196 | 4.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 82 | 136 | 3.6E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 197 | 428 | 2.6E-30 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 14 | 64 | 4.7E-6 | - |
| SMART | SM00320 | WD40_4 | 261 | 298 | 0.14 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 109 | 133 | 1.6E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 26 | 51 | 0.21 | IPR000571 |
| SMART | SM00320 | WD40_4 | 301 | 338 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 385 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 254 | 51.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 337 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 26 | 52 | 11.131343 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 107 | 134 | 14.483252 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 307 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 177 | 11.629227 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 285 | 299 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_051143500.1 | zinc finger CCCH domain-containing protein 48-like [Andrographis paniculata] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9IAM3 | Cdc4 and related F-box and WD-40 protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology