Basic Information
Locus ID:
jg23254
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7280987 | 7283287 | - | jg23254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 67,506.79 Da | 49.13 | 79.76 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 436 | 528 | 2.53E-12 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 107 | 299 | 3.58E-19 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 154 | 329 | 2.7E-22 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 432 | 530 | 9.4E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 458 | 622 | 11.283893 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 464 | 486 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 423 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_011096697.1 | serine/threonine-protein kinase-like protein CCR4 [Sesamum indicum] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UAM3 | serine/threonine-protein kinase-like protein CCR4 OS=Sesamum indicum OX=4182 GN=LOC105175799 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology