Basic Information
Locus ID:
jg23244
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7207922 | 7210417 | + | jg23244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 50,735.05 Da | 59.37 | 82.75 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 12 | 189 | 6.15607E-40 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 260 | 303 | 8.11225E-22 | - |
| Pfam | PF13639 | Ring finger domain | 260 | 303 | 9.3E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 62 | 169 | 1.1E-5 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 79 | 117 | 8.63E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 309 | 2.59E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 18 | 179 | 3.2E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 308 | 6.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 261 | 302 | 7.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 261 | 303 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 393 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_011096907.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Sesamum indicum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UB48 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Sesamum indicum OX=4182 GN=LOC105175959 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology