Basic Information
Locus ID:
jg2320
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 2043161 | 2048437 | - | jg2320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 63,316.61 Da | 52.48 | 84.09 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 216 | 270 | 4.6E-7 | IPR020683 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 168 | 213 | 1.9E-6 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 6.8E-18 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 372 | 3.15E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 270 | 8.23E-49 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 145 | 275 | 6.0E-23 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 5 | 144 | 7.5E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 383 | 4.1E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.92 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 173 | 202 | 7.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 216 | 248 | 2.8E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 173 | 202 | 10.4977 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.17345 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 216 | 242 | 10.550764 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 14.052906 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 173 | 205 | 11.16695 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 216 | 242 | 10.579329 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 365 | 9.538678 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 330 | 339 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 482 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_011076205.1 | E3 ubiquitin-protein ligase XBAT33 [Sesamum indicum] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SZB3 | E3 ubiquitin-protein ligase XBAT33 OS=Sesamum indicum OX=4182 GN=LOC105160503 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology