Basic Information
Locus ID:
jg2319
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 2031539 | 2035444 | - | jg2319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 141,126.02 Da | 32.24 | 110.42 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 171 | 193 | 1.9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1025 | 1293 | 4.3E-45 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 760 | 780 | 0.25 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 195 | 255 | 4.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 686 | 746 | 1.1E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 66 | 1.0E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 555 | 613 | 1.9E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1003 | 1295 | 9.71E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 636 | 918 | 5.67E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 55 | 364 | 8.5E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 368 | 619 | 2.95E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 366 | 642 | 1.1E-74 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 986 | 1098 | 9.2E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 643 | 927 | 1.4E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 84 | 365 | 2.5E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 83 | 3.9E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1099 | 1301 | 6.0E-57 | - |
| SMART | SM00365 | LRR_sd22_2 | 97 | 116 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 576 | 602 | 500.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 855 | 881 | 71.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 193 | 223 | 160.0 | - |
| SMART | SM00220 | serkin_6 | 1023 | 1295 | 1.9E-35 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 733 | 759 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 121 | 136 | 480.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 781 | 803 | 470.0 | - |
| SMART | SM00369 | LRR_typ_2 | 757 | 780 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 733 | 756 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 710 | 732 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 169 | 192 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 290 | 313 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 600 | 624 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 855 | 879 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 217 | 4.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 685 | 708 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 361 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 121 | 145 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 242 | 266 | 6.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 120 | 53.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1023 | 1301 | 38.49184 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1145 | 1157 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1029 | 1052 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011076203.1 | leucine-rich repeat receptor protein kinase EMS1 [Sesamum indicum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T2H0 | leucine-rich repeat receptor protein kinase EMS1 OS=Sesamum indicum OX=4182 GN=LOC105160501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |