Basic Information
Locus ID:
jg23176
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6487799 | 6488947 | - | jg23176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 43,498.89 Da | 76.75 | 61.28 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 253 | 295 | 9.67303E-25 | - |
| Pfam | PF13639 | Ring finger domain | 253 | 295 | 5.7E-13 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 8.8E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 305 | 3.98E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 301 | 5.5E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 254 | 294 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 254 | 295 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 346 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011069558.1 | E3 ubiquitin-protein ligase RING1 isoform X2 [Sesamum indicum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SRC7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105155383 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology