Basic Information
Locus ID:
jg23088
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5719690 | 5720380 | - | jg23088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 19,602.78 Da | 50.14 | 89.60 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 148 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 105 | 0.073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 152 | 3.43E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 168 | 1.3E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 109 | 149 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 64 | 106 | 2.2 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022850419.1 | WD repeat-containing protein 26 homolog [Olea europaea var. sylvestris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0R0U3 | WD repeat-containing 26-like isoform X1 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A081275 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||