Basic Information
Locus ID:
jg22921
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4194476 | 4200955 | - | jg22921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 143,070.73 Da | 34.10 | 91.73 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 41 | 349 | 3.57384E-72 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 195 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 77 | 111 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 153 | 5.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 308 | 7.2E-4 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 896 | 1242 | 6.4E-139 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 376 | 786 | 9.3E-122 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 1243 | 1270 | 4.9E-5 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 263 | 3.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 34 | 347 | 2.49E-70 | IPR036322 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 355 | 583 | 3.27E-7 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 786 | 893 | 5.1E-27 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 672 | 785 | 1.4E-48 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 351 | 5.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 111 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 30 | 69 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 153 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 349 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 8.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 3.4E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1242 | 1266 | 1.3 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 783 | 1249 | 6.6E-126 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 31 | 787 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 196 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 79 | 120 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 121 | 153 | 10.759232 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 266 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 196 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 317 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 308 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 162 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 79 | 111 | 9.493783 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 182 | 196 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 140 | 154 | 1.1E-6 | IPR020472 |
| Coils | Coil | Coil | 1213 | 1233 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_051123775.1 | coatomer subunit alpha-1-like [Andrographis paniculata] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G9GGI6 | Coatomer subunit alpha OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology