Basic Information
Locus ID:
jg22837
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
GGPS2
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3501127 | 3509271 | + | jg22837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 79,535.05 Da | 44.09 | 91.15 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 98 | 365 | 8.03026E-94 | IPR000092 |
| Pfam | PF13867 | Sin3 binding region of histone deacetylase complex subunit SAP30 | 668 | 721 | 1.5E-19 | IPR025718 |
| Pfam | PF00348 | Polyprenyl synthetase | 101 | 338 | 1.8E-55 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 76 | 347 | 1.34E-88 | IPR008949 |
| Gene3D | G3DSA:6.10.160.20 | - | 643 | 728 | 2.4E-24 | IPR038291 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 67 | 375 | 2.4E-104 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 151 | 167 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 285 | 297 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 651 | - | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 79 | 365 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 79 | 365 | 0.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_011083737.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Sesamum indicum] | 0 |
| P80042 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=GGPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TKS2 | geranylgeranyl pyrophosphate synthase, chloroplastic-like OS=Sesamum indicum OX=4182 GN=LOC105166180 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology