Basic Information
Locus ID:
jg22835
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3481582 | 3482680 | - | jg22835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 24,566.28 Da | 62.06 | 53.14 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 30 | 74 | 7.44276E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 30 | 77 | 2.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 85 | 8.37E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 72 | 9.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 73 | 13.743283 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 47 | 56 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 117 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051123626.1 | uncharacterized protein LOC127246357 [Andrographis paniculata] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A830D7K5 | RING-type E3 ubiquitin transferase OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002566300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology