Basic Information
Locus ID:
jg22769
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2921135 | 2932279 | + | jg22769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 69,860.76 Da | 52.67 | 72.27 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 25 | 114 | 2.6E-31 | IPR000232 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 542 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 22 | 114 | 2.31E-33 | IPR036390 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 404 | 606 | 3.3E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 626 | 2.2E-22 | IPR015943 |
| Gene3D | G3DSA:1.10.10.10 | - | 17 | 116 | 4.8E-37 | IPR036388 |
| SMART | SM00320 | WD40_4 | 503 | 542 | 1.3E-8 | IPR001680 |
| SMART | SM00415 | hsfneu3 | 21 | 114 | 7.7E-59 | IPR000232 |
| SMART | SM00320 | WD40_4 | 556 | 604 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 500 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 510 | 543 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 510 | 543 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 64 | 88 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 63 | 75 | 3.0E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 25 | 48 | 3.0E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 76 | 88 | 3.0E-19 | IPR000232 |
| Coils | Coil | Coil | 186 | 220 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G46264.1 | heat shock transcription factor B4. Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions. | 0 |
| RefSeq | XP_011074417.1 | LOW QUALITY PROTEIN: heat stress transcription factor B-4-like [Sesamum indicum] | 0 |
| Q9C635 | Heat stress transcription factor B-4 OS=Arabidopsis thaliana OX=3702 GN=HSFB4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835JH22 | HSF_DOMAIN domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf14G0015500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology