Basic Information
Locus ID:
jg22607
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1417993 | 1418487 | + | jg22607 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 19,074.28 Da | 56.08 | 91.58 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 74 | 118 | 9.73365E-8 | - |
| Pfam | PF13639 | Ring finger domain | 73 | 118 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 125 | 1.28E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 123 | 1.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 73 | 118 | 0.0024 | IPR011016 |
| SMART | SM00184 | ring_2 | 74 | 117 | 7.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 74 | 118 | 12.799091 | IPR001841 |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012829858.1 | PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Erythranthe guttata] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GEW8 | RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11433, jg22607, jg6095 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024334, Pov_00024335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132628965, gene-LOC132628972, gene-LOC132628983 |
| Solanaceae | Solanum chilense | 2 | SOLCI000858300, SOLCI002333900 |