Basic Information
Locus ID:
jg22525
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 671501 | 673573 | + | jg22525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 76,144.62 Da | 48.59 | 86.38 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 419 | 602 | 2.0E-35 | IPR001245 |
| Pfam | PF01476 | LysM domain | 218 | 264 | 0.0073 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 368 | 663 | 1.18E-58 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 454 | 5.2E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 456 | 682 | 8.3E-50 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 293 | 670 | 29.870102 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_011083369.1 | protein LYK5 [Sesamum indicum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TH62 | protein LYK5 OS=Sesamum indicum OX=4182 GN=LOC105165912 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology