Basic Information
Locus ID:
jg22516
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 582000 | 591444 | - | jg22516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 68,451.92 Da | 56.46 | 68.44 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 8 | 114 | 2.9E-26 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 3 | 138 | 1.44E-49 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 93 | 142 | 1.3E-10 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 16 | 92 | 3.1E-28 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 7 | 166 | 30.399218 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 428 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35580.1 | NAC transcription factor-like 9. | 0 |
| RefSeq | XP_011081339.1 | protein NTM1-like 9 isoform X1 [Sesamum indicum] | 0 |
| F4JN35 | Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TEU6 | protein NTM1-like 9 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105164394 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22516, jg37419, jg5025 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132920 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G03740 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G33060.2, AT4G35580.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28600.v2.2, Sp2g04660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g035920.2N, BniB04g049740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0684 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0775 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11635 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003096, Pov_00041670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.12, evm.TU.Scaffold_16_RagTag.7 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18400, nbisL1-mrna-22245, nbisL1-mrna-22262 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13325, nbisL1-mrna-3220 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20460, nbisL1-mrna-8707 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.395, evm.TU.utg000022l.490 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014428, Maker00018351 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16284, nbisL1-mrna-3633 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10516, nbisL1-mrna-6831 |
| Salicaceae | Populus euphratica | 2 | populus_peu00195, populus_peu17262 |