Basic Information
Locus ID:
jg22317
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 15490864 | 15494557 | + | jg22317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 71,061.76 Da | 43.50 | 89.61 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 122 | 7.19031E-47 | - |
| Pfam | PF03000 | NPH3 family | 213 | 474 | 3.2E-94 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 113 | 1.4E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 114 | 2.75E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 135 | 5.6E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 97 | 11.874514 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 498 | 92.807938 | IPR027356 |
| Coils | Coil | Coil | 538 | 565 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_011096666.1 | BTB/POZ domain-containing protein At1g30440 [Sesamum indicum] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UPU6 | BTB/POZ domain-containing protein At1g30440 OS=Sesamum indicum OX=4182 GN=LOC105175780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology