Basic Information
Locus ID:
jg22163
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14530678 | 14533795 | + | jg22163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 28,901.33 Da | 29.55 | 79.40 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 150 | 202 | 5.93693E-13 | - |
| Pfam | PF12906 | RING-variant domain | 150 | 201 | 2.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 204 | 3.88E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 212 | 2.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 149 | 202 | 4.3E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 142 | 208 | 17.652409 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011085973.1 | uncharacterized protein LOC105167841 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TKP0 | uncharacterized protein LOC105167841 OS=Sesamum indicum OX=4182 GN=LOC105167841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology