Basic Information
Locus ID:
jg22154
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14489820 | 14494240 | + | jg22154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 53,705.98 Da | 44.88 | 94.17 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 61 | 2.4E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 89 | 148 | 1.5E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 167 | 3.57E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 495 | 7.09E-5 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 390 | 497 | 1.1E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 200 | 6.8E-41 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 316 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011085985.1 | LOW QUALITY PROTEIN: protein MALE DISCOVERER 2 [Sesamum indicum] | 0 |
| C0LGU7 | Protein MALE DISCOVERER 1 OS=Arabidopsis thaliana OX=3702 GN=MDIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HMT3 | Serine/threonine protein kinase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology