Basic Information
Locus ID:
jg22121
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14286920 | 14293153 | + | jg22121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 84,478.95 Da | 30.42 | 84.97 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 387 | 569 | 9.48153E-83 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 28 | 189 | 2.44103E-90 | - |
| Pfam | PF00657 | GDSL-like Lipase/Acylhydrolase | 598 | 656 | 1.4E-7 | IPR001087 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 25 | 192 | 2.7E-33 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 222 | 339 | 2.9E-22 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 432 | 557 | 7.4E-15 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 217 | 364 | 3.27E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 25 | 201 | 1.93E-42 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 387 | 582 | 1.23E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 197 | 2.0E-59 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 212 | 374 | 3.0E-43 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 586 | 716 | 6.4E-19 | IPR036514 |
| Gene3D | G3DSA:3.40.50.970 | - | 381 | 568 | 6.4E-55 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 777 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_011096418.1 | pyruvate decarboxylase 1 [Sesamum indicum] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9I774 | pyruvate decarboxylase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_01672 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology