Basic Information
Locus ID:
jg22065
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13947064 | 13951715 | + | jg22065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 49,424.80 Da | 58.67 | 69.16 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16531 | RING-HC_RING1_like | 75 | 115 | 1.77953E-22 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 74 | 114 | 8.7E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 68 | 130 | 3.09E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 145 | 7.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 75 | 114 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 75 | 115 | 12.076194 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 91 | 100 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 258 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.3 | - | 0 |
| RefSeq | XP_011096337.1 | putative E3 ubiquitin-protein ligase RING1a isoform X1 [Sesamum indicum] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UEG8 | putative E3 ubiquitin-protein ligase RING1a isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105175559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg20271, jg22065, jg24915, jg38682, jg38684 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21077, gene_22227 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018075 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g182790, BVRB_9g205200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11766, Sbi_jg26006, Sbi_jg46644, Sbi_jg9835 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18856, Seu_jg20998 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017071, GOSA_00025056 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl43709, Sgl45967, Sgl45968, Sgl50665, Sgl50666, Sgl79963 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011781, gene:ENSEOMG00000034280 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005590, CQ.Regalona.r1.8BG0005790 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30020090, pistato.v30072970 |
| Apiaceae | Apium graveolens | 1 | Ag6G01023 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012430 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696416, gene-LOC103707151 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1134.V1.1, AsparagusV1_07.3820.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G10417, Ftri18G26639 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03770.2, AT5G44280.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003181m.g.v1.0, Thhalv10007494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02630.v2.2, Sp2g09100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g061560.2N, BniB04g017150.2N, BniB06g046970.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2192, Ceq02G2656 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2478, Cgl02G2743 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g01450, gene.Cymno17g05260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11703, nbisL1-mrna-7615 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1807, evm.TU.LG12.921 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038291 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00186, Lb3G19394 |
| Poaceae | Echinochloa crus-galli | 10 | AH01.1556, AH02.3556, AH05.1902, BH01.1747, BH02.3404 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0036500, gene-QOZ80_5AG0368080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0068410.1, HORVU.MOREX.r3.3HG0294850.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_014710, gene-QYE76_055987, gene-QYE76_056112 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G022330, Oco02G022990, Oco02G023000, Oco09G013170 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os01g58400.1, LOC_Os05g41795.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G172900, gene-BS78_03G304200 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504375, Pt_Chr0601710 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G017710, Chr02G007360, Chr05G026120, Chr08G023840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G510300, Tel3E01G524000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG047050, gene_TRIDC1BG053200 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G315400.1, TraesCS1B02G327300.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb043300_P001, Zm00001eb150860_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11705, nbis-gene-14341, nbis-gene-25280 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11332, Zma_g26931, Zma_g28508, Zma_g8809 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1082, evm.TU.LG11.437, evm.TU.LG18.1451 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.830, evm.TU.Scaffold_13_RagTag.245 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29457 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20580, nbisL1-mrna-9966 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20921, nbisL1-mrna-21569 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.150, evm.TU.utg000027l.136 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006335, Maker00015523 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10619, nbisL1-mrna-5946 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16879, nbisL1-mrna-21941 |
| Salicaceae | Populus euphratica | 4 | populus_peu10037, populus_peu18148, populus_peu22509 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616799, gene-LOC132619456, gene-LOC132624916 |
| Solanaceae | Solanum chilense | 2 | SOLCI004511600, SOLCI006557200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009135, gene-LOC107023959 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17515, gene_17634 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1354, TC07G2074 |
| Zosteraceae | Zostera marina | 2 | Zosma03g22930.v3.1, Zosma05g21010.v3.1 |