Basic Information
Locus ID:
jg22059
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13869192 | 13888283 | + | jg22059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 106,400.04 Da | 54.73 | 70.28 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 366 | 644 | 6.23533E-51 | - |
| Pfam | PF02701 | Dof domain, zinc finger | 731 | 785 | 4.9E-32 | IPR003851 |
| Pfam | PF00400 | WD domain, G-beta repeat | 441 | 479 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 559 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 644 | 0.059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 435 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 355 | 644 | 1.23E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 341 | 490 | 3.2E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 491 | 682 | 7.8E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 439 | 479 | 7.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 559 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 394 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 563 | 602 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 435 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 605 | 644 | 9.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 446 | 488 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 446 | 481 | 9.783781 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 2 | 27 | 8.098556 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 435 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 612 | 644 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 435 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50884 | Zinc finger Dof-type profile. | 731 | 785 | 29.161465 | IPR003851 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 612 | 644 | 9.071966 | - |
| ProSitePatterns | PS01361 | Zinc finger Dof-type signature. | 733 | 769 | - | IPR003851 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 466 | 480 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 972 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 810 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_011096320.1 | transcriptional corepressor LEUNIG-like [Sesamum indicum] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9U6G4 | transcriptional corepressor LEUNIG-like OS=Sesamum indicum OX=4182 GN=LOC105175551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology