Basic Information
Locus ID:
jg22041
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Sphingolipid delta(4)-desaturase DES1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13733506 | 13735575 | + | jg22041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 38,677.19 Da | 48.48 | 85.15 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03508 | Delta4-sphingolipid-FADS-like | 35 | 322 | 5.22676E-172 | IPR011388 |
| Pfam | PF00487 | Fatty acid desaturase | 75 | 292 | 2.0E-21 | IPR005804 |
| Pfam | PF08557 | Sphingolipid Delta4-desaturase (DES) | 17 | 50 | 1.8E-19 | IPR013866 |
| SMART | SM01269 | Lipid_DES_2 | 14 | 52 | 1.4E-19 | IPR013866 |
| PIRSF | PIRSF017228 | Sphnglp_dlt4_des | 4 | 332 | 6.8E-150 | IPR011388 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04930.1 | fatty acid desaturase family protein. Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues. | 0 |
| RefSeq | XP_011086079.1 | sphingolipid delta(4)-desaturase DES1-like [Sesamum indicum] | 0 |
| Q6H5U3 | Sphingolipid delta(4)-desaturase DES1-like OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HQM1 | Sphingolipid delta(4)-desaturase DES1-like OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07581 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22041 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_336 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26208, Sbi_jg9981 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22367 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017015 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45903, Sgl50602 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011451, gene:ENSEOMG00000034224 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004970, CQ.Regalona.r1.8BG0005150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30073320 |
| Apiaceae | Apium graveolens | 1 | Ag7G00735 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G012560, COCNU_08G010050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698206, gene-LOC103719205 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3448.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028789m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g04030.v2.2, SpUn0051_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g047380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2306 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2615 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7627 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005711 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37027 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1677, BH09.1863, CH09.1995 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309600, gene-QOZ80_4BG0340650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045163 |
| Poaceae | Oryza coarctata | 2 | Oco03G016360, Oco04G017100 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G168200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301968 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G008100, Chr25G006670, Chr26G011590, Chr30G006580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G643100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG053960, gene_TRIDC2BG056700 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G372900.1, TraesCS2B02G389900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb075800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37157 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20104 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1605, evm.TU.LG14.852 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.860 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23782, nbisL1-mrna-29483 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9138 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21594 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006359 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10641 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21909 |
| Salicaceae | Populus euphratica | 2 | populus_peu18201, populus_peu18202 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631310 |
| Solanaceae | Solanum chilense | 1 | SOLCI007123600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002661 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22291_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2153 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16850.v3.1 |