Basic Information
Locus ID:
jg22034
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13679778 | 13685693 | + | jg22034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 77,118.89 Da | 44.27 | 96.82 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 432 | 697 | 4.3E-36 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 1.0E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 405 | 698 | 1.19E-59 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 215 | 5.67E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 506 | 704 | 2.8E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 398 | 505 | 2.4E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 235 | 1.3E-35 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 429 | 702 | 30.025576 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 241 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20850.1 | STRUBBELIG-receptor family 1. | 0 |
| RefSeq | XP_011096273.1 | protein STRUBBELIG-RECEPTOR FAMILY 1 [Sesamum indicum] | 0 |
| Q06BH3 | Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana OX=3702 GN=SRF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UNZ0 | protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Sesamum indicum OX=4182 GN=LOC105175518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology