Basic Information
Locus ID:
jg22012
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13498885 | 13510546 | - | jg22012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 95,986.35 Da | 62.61 | 78.31 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 243 | 359 | 1.88807E-19 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 357 | 2.2E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 693 | 754 | 7.61E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 384 | 1.53E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 689 | 761 | 1.3E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 129 | 388 | 1.5E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 192 | 368 | 2.3E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 691 | 755 | 2.4E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 719 | 756 | 10.435972 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 15.831785 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 864 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 550 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_011096251.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sesamum indicum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UDL4 | protein-serine/threonine phosphatase OS=Sesamum indicum OX=4182 GN=LOC105175498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology