Basic Information
Locus ID:
jg21987
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13328423 | 13334215 | - | jg21987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 67,723.64 Da | 42.89 | 83.72 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 85 | 131 | 6.3E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 26 | 65 | 7.2E-20 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 103 | 464 | 1.18E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 514 | 6.1E-125 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 64 | 8.8E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 318 | 342 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 451 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 378 | 401 | 360.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 260 | 283 | 82.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 24.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011096196.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UE27 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Sesamum indicum OX=4182 GN=LOC105175456 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology