Basic Information
Locus ID:
jg21930
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12909742 | 12910899 | - | jg21930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 44,043.67 Da | 34.89 | 92.60 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 47 | 80 | 3.6E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 142 | 3.79E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 82 | 1.1E-9 | - |
| SMART | SM00256 | fbox_2 | 46 | 86 | 6.5E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 86 | 9.974368 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09190.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_011096163.1 | putative F-box protein At5g50220 [Sesamum indicum] | 0 |
| Q9M0Q9 | Putative F-box protein At4g09190 OS=Arabidopsis thaliana OX=3702 GN=At4g09190 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6I9U9E7 | putative F-box protein At5g50220 OS=Sesamum indicum OX=4182 GN=LOC105175427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21930, jg21931 |
| Apiaceae | Apium graveolens | 5 | Ag2G00184, Ag4G00712, Ag5G00094, Ag6G00932, Ag6G00934 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00005860, Pov_00005862, Pov_00005863, Pov_00005864 ... |
| Poaceae | Echinochloa crus-galli | 1 | AH05.4160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.746, evm.TU.Scaffold_17_RagTag.806 |
| Rhizophoraceae | Carallia pectinifolia | 11 | nbisL1-mrna-22820, nbisL1-mrna-22893, nbisL1-mrna-23439 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.404 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004309, Maker00004369 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-21034, nbisL1-mrna-21035, nbisL1-mrna-21043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14243, nbisL1-mrna-14263 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599182 |
| Solanaceae | Solanum chilense | 2 | SOLCI001944300, SOLCI007333400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075087 |