Basic Information
Locus ID:
jg21927
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12888625 | 12895156 | + | jg21927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 69,513.61 Da | 47.12 | 79.72 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 117 | 207 | 1.6E-12 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 481 | 585 | 3.0E-9 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 225 | 320 | 7.9E-12 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 418 | 608 | 3.53E-29 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 218 | 322 | 2.6E-21 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 110 | 209 | 2.3E-16 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 604 | 1.8E-29 | - |
| SMART | SM00219 | tyrkin_6 | 431 | 587 | 0.0022 | IPR020635 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 107 | 209 | 15.873307 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 215 | 322 | 17.294487 | IPR002902 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.3 | - | 0 |
| RefSeq | XP_031279173.1 | cysteine-rich receptor-like protein kinase 10 [Pistacia vera] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A1UM32 | Cysteine-rich receptor-like protein kinase 10 OS=Morella rubra OX=262757 GN=CJ030_MR0G004296 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg21923, jg21925, jg21927, jg581 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1555 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1737 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.581 |
| Salicaceae | Populus euphratica | 1 | populus_peu10241 |