Basic Information
Locus ID:
jg2186
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 989261 | 995961 | + | jg2186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 49,163.72 Da | 39.39 | 76.49 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 172 | 210 | 2.97302E-15 | - |
| CDD | cd03829 | Sina | 288 | 416 | 1.85244E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 216 | 415 | 1.2E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 227 | 419 | 3.73E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 214 | 1.37E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 286 | 415 | 8.0E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 225 | 5.0E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 282 | 8.6E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 227 | 287 | 13.980728 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 174 | 210 | 9.479666 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 160 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011075989.1 | E3 ubiquitin-protein ligase SINAT5 [Sesamum indicum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T1X7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105160356 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology