Basic Information
Locus ID:
jg2158
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 801157 | 806697 | - | jg2158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 25,410.17 Da | 57.56 | 73.69 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 132 | 198 | 1.61721E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 200 | 3.1E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 126 | 200 | 4.03E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 213 | 4.5E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 133 | 212 | 7.0E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 216 | 10.701297 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_020549012.1 | RNA-binding protein 1-like isoform X1 [Sesamum indicum] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9T1T3 | RNA-binding protein 1-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105160314 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology