Basic Information
Locus ID:
jg21401
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 7332508 | 7341753 | - | jg21401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 103,567.58 Da | 54.46 | 80.28 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 709 | 742 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 791 | 826 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 133 | 395 | 7.05E-20 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 618 | 928 | 7.98E-53 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 133 | 391 | 2.2E-22 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 931 | 1.2E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 702 | 742 | 2.2E-7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 95 | 382 | 2.7E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 660 | 699 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 835 | 874 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 826 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 745 | 784 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 605 | 649 | 0.048 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 382 | 9.12139 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 709 | 751 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 795 | 829 | 10.627413 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 709 | 746 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 795 | 835 | 13.148488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 729 | 743 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 813 | 827 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 729 | 743 | 5.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 686 | 700 | 5.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 813 | 827 | 5.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 240 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_011098302.1 | protein SPA1-RELATED 4-like isoform X1 [Sesamum indicum] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UJT9 | protein SPA1-RELATED 4-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105176994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology