Basic Information
Locus ID:
jg21078
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 938340 | 940800 | - | jg21078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 24,918.09 Da | 51.59 | 53.19 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 22 | 156 | 2.42828E-58 | - |
| Pfam | PF01426 | BAH domain | 23 | 135 | 4.2E-23 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 8.3E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 191 | 7.09E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 132 | 9.2E-31 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 200 | 1.4E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 4.0E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 1.1E-39 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.1874 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 23.268526 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_030483088.1 | chromatin remodeling protein EBS isoform X1 [Cannabis sativa] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HXA7 | [histone H3]-lysine-36 demethylase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology