Basic Information
Locus ID:
jg20936
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 21736607 | 21738335 | + | jg20936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 22,557.81 Da | 40.27 | 94.81 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10584 | Proteasome subunit A N-terminal signature | 62 | 84 | 5.1E-9 | IPR000426 |
| Pfam | PF00227 | Proteasome subunit | 104 | 168 | 7.8E-15 | IPR001353 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 62 | 169 | 2.25E-26 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 58 | 104 | 7.9E-15 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 105 | 189 | 3.4E-18 | IPR029055 |
| SMART | SM00948 | Proteasome_A_N_2 | 62 | 84 | 7.1E-8 | IPR000426 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15165.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein. | 0 |
| RefSeq | XP_011096850.1 | proteasome subunit alpha type-4 [Sesamum indicum] | 0 |
| F4JJE5 | Putative proteasome subunit alpha type-4-B OS=Arabidopsis thaliana OX=3702 GN=PAC2 PE=5 SV=1 | 0 | |
| TrEMBL | A0A830CXI6 | Proteasome subunit alpha type OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002228400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20936, jg6509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19878 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g030070, BVRB_5g113140 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21582, Sbi_jg22239, Sbi_jg30818, Sbi_jg58449 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16166, Seu_jg28320 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008765 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54980, Sgl60239, Sgl62710, Sgl67330 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006351, gene:ENSEOMG00000020143 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0020940, CQ.Regalona.r1.2AG0022750 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30199180, pistato.v30249260, pistato.v30279580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01036, Ag7G01116 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G018330, COCNU_11G000680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710835 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.697.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G32308, Ftri3G17589 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G22110.1, AT4G15165.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021384m.g.v1.0, Thhalv10026071m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g19940.v2.2, Sp7g13390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g040790.2N, BniB06g058480.2N, BniB07g049500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0495 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0508 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0088s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36670, gene.Thate02g36690, gene.Thate08g15680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10231 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1592, evm.TU.LG01.2754 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033349, Pov_00038674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29027, Lb5G29029 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.382, BH06.510, CH06.505 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0509910, gene-QOZ80_6AG0510790 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656250.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028286, gene-QYE76_028396 |
| Poaceae | Oryza coarctata | 3 | Oco11G003210, Oco11G003520, Oco12G003170 |
| Poaceae | Oryza sativa | 3 | LOC_Os06g07140.1, LOC_Os06g07878.1, LOC_Os06g07978.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G057000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022040, Chr14G002450, Chr21G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G257400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015330, gene_TRIDC7BG004650 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G130500.1.cds1, TraesCS7B02G030800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb271660_P001, Zm00001eb375510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5087 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29172, Zma_g31420 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.833, evm.TU.LG02.834, evm.TU.LG05.485 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1035 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13461, nbisL1-mrna-16570 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5346 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4355 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000004l.102, add.evm.TU.utg000008l.325 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17579, nbisL1-mrna-18215 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7676, nbisL1-mrna-9637 |
| Salicaceae | Populus euphratica | 2 | populus_peu10550, populus_peu26456 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606818, gene-LOC132621645 |
| Solanaceae | Solanum chilense | 1 | SOLCI005623200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011444 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21721_chr08_-, STRG.32416_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07140.v3.1 |