Basic Information
Locus ID:
jg2069
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 235793 | 243486 | + | jg2069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 131,621.02 Da | 49.59 | 68.52 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 874 | 1154 | 1.74499E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 901 | 959 | 7.9E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1119 | 1154 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 984 | 1018 | 4.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1031 | 1069 | 0.052 | IPR001680 |
| Pfam | PF00855 | PWWP domain | 12 | 94 | 1.1E-9 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 11 | 118 | 8.42E-10 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 858 | 1156 | 2.12E-59 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 810 | 1156 | 1.8E-122 | IPR015943 |
| Gene3D | G3DSA:2.30.30.140 | - | 3 | 123 | 2.8E-10 | - |
| SMART | SM00320 | WD40_4 | 1027 | 1069 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 979 | 1018 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1072 | 1112 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 895 | 934 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 937 | 975 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1115 | 1154 | 1.1E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 986 | 1018 | 11.550137 | - |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 13 | 68 | 10.481375 | IPR000313 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1122 | 1154 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 902 | 943 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1122 | 1154 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 986 | 1018 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 902 | 934 | 9.335602 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 151 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_011075809.1 | uncharacterized protein LOC105160226 [Sesamum indicum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SZG0 | uncharacterized protein LOC105160226 OS=Sesamum indicum OX=4182 GN=LOC105160226 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2069 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3431 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018387 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14868, Sbi_jg55644 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26199 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01109, Sgl06194 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002781, gene:ENSEOMG00000029997 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007170, CQ.Regalona.r1.3BG0007180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30100260, pistato.v30291820 |
| Apiaceae | Apium graveolens | 2 | Ag2G02154, Ag3G02053 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G015290, COCNU_10G009480, COCNU_10G009490 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703817, gene-LOC103714526, gene-LOC120109527 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.927.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00883 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020126m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g061690.2N, BniB07g060800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2117 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g00850, gene.Cymno18g05270 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g22260, gene.Thate09g04280, gene.Thate09g04290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8028, nbisL1-mrna-8029 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1788 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00012873, Pov_00032480, Pov_00032481, Pov_00041264 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02579, Lb5G26875 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3114, BH07.2938, CH07.3016 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0197620 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0194200.1, HORVU.MOREX.r3.6HG0606490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024595, gene-QYE76_046106 |
| Poaceae | Oryza coarctata | 4 | Oco03G019020, Oco04G019780, Oco07G014850, Oco08G014340 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47170.1, LOC_Os04g51060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G244300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203880, Pt_Chr0301464, Pt_Chr0301503 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004430, Chr09G022650, Chr15G005840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G747500, Tel6E01G494800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063490, gene_TRIDC2BG067530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G442800.1, TraesCS2B02G463900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb188160_P001, Zm00001eb251630_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9029 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14202 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.647, evm.TU.LG04.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.592, evm.TU.Scaffold_2_RagTag.1683 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3514, nbisL1-mrna-7581 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4940, nbisL1-mrna-5660 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13989, nbisL1-mrna-5601 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005430, Maker00011474 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2724, nbisL1-mrna-8450 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16744, nbisL1-mrna-699 |
| Salicaceae | Populus euphratica | 2 | populus_peu16213, populus_peu19327 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602793, gene-LOC132632228 |
| Solanaceae | Solanum chilense | 2 | SOLCI000095200, SOLCI001335200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014780, gene-LOC107021107 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3935, gene_9913 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2787, TC08G1073 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02510.v3.1, Zosma06g02290.v3.1 |