Basic Information
Locus ID:
jg20678
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19928127 | 19949271 | + | jg20678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 213,007.34 Da | 39.20 | 94.10 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00854 | POT family | 1524 | 1628 | 3.1E-16 | IPR000109 |
| Pfam | PF01823 | MAC/Perforin domain | 991 | 1176 | 8.0E-29 | IPR020864 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 727 | 841 | 1.9E-6 | IPR001245 |
| Pfam | PF00854 | POT family | 1652 | 1890 | 5.1E-47 | IPR000109 |
| Pfam | PF11721 | Malectin domain | 405 | 588 | 9.5E-35 | IPR021720 |
| SUPERFAMILY | SSF52058 | L domain-like | 80 | 373 | 1.0E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 645 | 858 | 1.2E-34 | IPR011009 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1457 | 1626 | 9.29E-7 | IPR036259 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 204 | 1.6E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 270 | 386 | 8.6E-21 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 718 | 2.7E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 719 | 861 | 3.3E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 205 | 269 | 9.5E-13 | IPR032675 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1629 | 1919 | 9.8E-72 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1430 | 1628 | 9.0E-49 | IPR036259 |
| Gene3D | G3DSA:2.60.120.430 | - | 400 | 593 | 8.3E-32 | - |
| SMART | SM00457 | MACPF_8 | 1009 | 1178 | 2.6E-6 | IPR020864 |
| ProSiteProfiles | PS51412 | Membrane attack complex/perforin (MACPF) domain profile. | 887 | 1190 | 24.443401 | IPR020864 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 307 | 329 | 8.566733 | IPR001611 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1364 | 1392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1364 | 1387 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29690.1 | MAC/Perforin domain-containing protein. Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic <i>cad1-1</i> mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. | 0 |
| RefSeq | XP_011101924.1 | MACPF domain-containing protein CAD1 [Sesamum indicum] | 0 |
| Q9C7N2 | MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana OX=3702 GN=CAD1 PE=2 SV=1 | 0 | |
| TrEMBL | V4W966 | MACPF domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017858mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20678, jg22198, jg3176 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20407, gene_492 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016863, Ah031478 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g157290 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2203, Sbi_jg34313, Sbi_jg34314, Sbi_jg50324 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1911, Seu_jg2571 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005927, GOSA_00011492 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45591, Sgl50372, Sgl71062 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000007528, gene:ENSEOMG00000011005 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0022680, CQ.Regalona.r1.7BG0025200 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30071260, pistato.v30268850, pistato.v30269020 |
| Apiaceae | Apium graveolens | 3 | Ag6G01082, Ag7G00845, Ag8G00023 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G003560, COCNU_06G003840, COCNU_12G006320 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708888, gene-LOC103708954, gene-LOC103713418 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3478.V1.1, AsparagusV1_07.549.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G07765, Ftri11G03055, FtriNA22150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007234m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016530.2N, BniB03g034020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0482, Ceq08G0896 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0578, Cgl08G0913 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00860 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g08610, gene.Thate09g05680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11954, nbisL1-mrna-903 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.884, evm.TU.LG12.749 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004849, Pov_00023744 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09567, Lb2G09568, Lb3G21245 |
| Poaceae | Echinochloa crus-galli | 1 | BH02.3710 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033210, gene-QOZ80_1BG0083270 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0288830.1, HORVU.MOREX.r3.4HG0352420.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_055271, gene-QYE76_064390, gene-QYE76_065015 |
| Poaceae | Oryza coarctata | 2 | Oco01G019190, Oco02G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G275700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103799, Pt_Chr0602190, Pt_Chr0602205 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009770, Chr03G016120, Chr05G023720 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G451300, Tel4E01G192600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG040530, gene_TRIDC3BG045670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G272500.1, TraesCS3B02G306200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb153200_P004, Zm00001eb371010_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12915, nbis-gene-26474 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11135, Zma_g8650 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.892, evm.TU.LG15.798, evm.TU.LG18.204 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g10620, gene.Posoc07g12940 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.429, evm.TU.Scaffold_2_RagTag.545 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30706, nbisL1-mrna-4651 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1583, nbisL1-mrna-2090, nbisL1-mrna-9959 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-22056, nbisL1-mrna-22057, nbisL1-mrna-9644 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.628, evm.TU.utg000015l.213 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005530, Maker00015315 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2631, nbisL1-mrna-4124, nbisL1-mrna-4898 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13844, nbisL1-mrna-16622, nbisL1-mrna-21533 |
| Salicaceae | Populus euphratica | 5 | populus_peu09877, populus_peu11505, populus_peu17967 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606948, gene-LOC132621367, gene-LOC132631043 |
| Solanaceae | Solanum chilense | 3 | SOLCI002553200, SOLCI004773700, SOLCI007040600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002423, gene-LOC107011896, gene-LOC107029737 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1677_chr01_-, STRG.27834_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2815, TC07G0999 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05590.v3.1 |