Basic Information
Locus ID:
jg20582
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19231906 | 19235893 | + | jg20582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 45,023.37 Da | 31.75 | 94.72 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 66 | 389 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 69 | 331 | 4.9E-117 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 67 | 330 | 1.87E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 331 | 387 | 5.49E-17 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 96 | 391 | 3.8E-102 | IPR027417 |
| SMART | SM00382 | AAA_5 | 118 | 289 | 8.1E-11 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 66 | 386 | 1.1E-142 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 260 | 335 | 27.844063 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 97 | 255 | 30.053251 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 274 | 282 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 271 | 299 | 1.7E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 360 | 377 | 1.7E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 226 | 255 | 1.7E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 306 | 335 | 1.7E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 154 | 183 | 1.7E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 188 | 217 | 1.7E-74 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 67 | 392 | 44.716797 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_011095674.1 | DNA repair protein recA homolog 1, chloroplastic isoform X1 [Sesamum indicum] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UCJ9 | DNA repair protein recA homolog 1, chloroplastic isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105175053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology