halophFGD

Basic Information

Locus ID: jg20521

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	18560964	18568806	+	jg20521

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.11	49,040.48 Da	47.66	75.00	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	399	440	1.3E-7	-
Pfam	PF07002	Copine	168	345	1.5E-55	IPR010734
Pfam	PF07002	Copine	91	134	4.1E-10	IPR010734
SUPERFAMILY	SSF57850	RING/U-box	399	442	2.72E-5	-
SUPERFAMILY	SSF53300	vWA-like	68	292	1.39E-8	IPR036465
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	389	446	1.4E-11	IPR013083
SMART	SM00184	ring_2	402	434	0.0035	IPR001841
SMART	SM00327	VWA_4	66	307	9.0E-4	IPR002035
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	402	434	9.656702	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	1	38	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	11	28	-	-

KEGG Pathway

KO Term:

K16280 (E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14420.1	RING domain ligase2.
RefSeq	XP_011096142.1	E3 ubiquitin-protein ligase RGLG2-like [Sesamum indicum]
Swiss-Prot	Q9LY87	E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1
TrEMBL	A0A6I9U9D8	RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105175403 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg18806, jg19870, jg20521, jg20545, jg21730, jg25951, jg5533 ... jg39682, jg40407, jg7000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11861, gene_17478
Amaranthaceae	Atriplex hortensis	3	Ah005418, Ah012182, Ah013763
Amaranthaceae	Beta vulgaris	3	BVRB_4g079000, BVRB_6g145130, BVRB_6g147210
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg17649, Sbi_jg17650, Sbi_jg42024, Sbi_jg42800 ... Sbi_jg45424, Sbi_jg48084, Sbi_jg62330
Amaranthaceae	Salicornia europaea	3	Seu_jg11282, Seu_jg27443, Seu_jg900
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002518, GOSA_00007328, GOSA_00019428
Amaranthaceae	Suaeda glauca	7	Sgl24032, Sgl29214, Sgl31681, Sgl35178, Sgl36987, Sgl37280 ... Sgl40557
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000001716, gene:ENSEOMG00000003568 ... gene:ENSEOMG00000011302, gene:ENSEOMG00000012327, gene:ENSEOMG00000024942, gene:ENSEOMG00000026436, gene:ENSEOMG00000027130, gene:ENSEOMG00000044319
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0005390, CQ.Regalona.r1.4BG0005370 ... CQ.Regalona.r1.6AG0004130, CQ.Regalona.r1.6AG0011130, CQ.Regalona.r1.6BG0004220, CQ.Regalona.r1.6BG0011780
Anacardiaceae	Pistacia vera	3	pistato.v30140260, pistato.v30180260, pistato.v30201500
Apiaceae	Apium graveolens	4	Ag1G01261, Ag3G02069, Ag5G00721, AgUnG00448
Arecaceae	Cocos nucifera	6	COCNU_02G013530, COCNU_08G003720, COCNU_11G001810 ... scaffold001223G000060, scaffold001325G000020, scaffold016239G000050
Arecaceae	Phoenix dactylifera	12	gene-LOC103697793, gene-LOC103698408, gene-LOC103701349 ... gene-LOC103704949, gene-LOC103710674, gene-LOC103712299, gene-LOC103712316, gene-LOC103718705, gene-LOC103719831, gene-LOC120103649, gene-LOC120107860, gene-LOC120111355
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.887.V1.1, AsparagusV1_05.1090.V1.1 ... AsparagusV1_08.2475.V1.1, AsparagusV1_09.644.V1.1, AsparagusV1_09.988.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G15752, Ftri11G24714, Ftri13G17878, Ftri17G12010 ... Ftri18G09509, Ftri1G28742, Ftri5G02107
Brassicaceae	Arabidopsis thaliana	5	AT1G67800.2, AT1G79380.1, AT3G01650.1, AT5G14420.1 ... AT5G63970.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10004448m.g.v1.0, Thhalv10007950m.g.v1.0 ... Thhalv10013466m.g.v1.0, Thhalv10018670m.g.v1.0, Thhalv10019546m.g.v1.0, Thhalv10020651m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g23240.v2.2, Sp2g27040.v2.2, Sp3g00400.v2.2 ... Sp5g22810.v2.2, Sp5g34430.v2.2, Sp6g29600.v2.2
Brassicaceae	Brassica nigra	11	BniB01g060360.2N, BniB02g048250.2N, BniB03g045190.2N ... BniB04g001640.2N, BniB04g041370.2N, BniB05g024100.2N, BniB06g012210.2N, BniB06g050810.2N, BniB06g067740.2N, BniB07g035210.2N, BniB08g006940.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G1867, Ceq02G1427, Ceq02G1909, Ceq03G1688, Ceq03G1696 ... Ceq06G1698, Ceq07G1336, CeqSG0286
Casuarinaceae	Casuarina glauca	6	Cgl01G2034, Cgl02G1472, Cgl02G1986, Cgl03G1814, Cgl06G1760 ... Cgl07G1408
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05930, gene.Cymno07g10390, gene.Cymno07g12730 ... gene.Cymno08g07180
Dunaliellaceae	Dunaliella salina	3	Dusal.0176s00017.v1.0, Dusal.0176s00019.v1.0 ... Dusal.0176s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate04g23040, gene.Thate04g23070, gene.Thate05g15550 ... gene.Thate07g18210, gene.Thate09g12580, gene.Thate09g19360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10209, nbisL1-mrna-11515, nbisL1-mrna-2016 ... nbisL1-mrna-2273
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2980, evm.TU.LG03.650, evm.TU.LG05.252 ... evm.TU.LG10.983, evm.TU.LG11.78
Plantaginaceae	Plantago ovata	6	Pov_00014184, Pov_00022280, Pov_00024198, Pov_00027824 ... Pov_00033830, Pov_00041507
Plumbaginaceae	Limonium bicolor	4	Lb1G00933, Lb1G07235, Lb3G20769, Lb6G31023
Poaceae	Echinochloa crus-galli	20	AH01.5296, AH02.4247, AH02.4592, AH03.1077, AH06.2261 ... AH08.1922, AH08.253, BH02.4274, BH02.4650, BH03.1242, BH05.3292, BH06.2001, BH08.2013, BH08.238, CH02.4694, CH03.1377, CH05.3398, CH06.2281, CH08.2198, CH08.290
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0043760, gene-QOZ80_1AG0047380 ... gene-QOZ80_1BG0093790, gene-QOZ80_5AG0388180, gene-QOZ80_5BG0436580, gene-QOZ80_6AG0525640, gene-QOZ80_6AG0544700, gene-QOZ80_6BG0479320, gene-QOZ80_6BG0498200, gene-QOZ80_8AG0616480, gene-QOZ80_8AG0635600, gene-QOZ80_8BG0644030, gene-QOZ80_8BG0664410
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.3HG0308290.1, HORVU.MOREX.r3.3HG0323770.1 ... HORVU.MOREX.r3.3HG0323800.1, HORVU.MOREX.r3.5HG0457210.1, HORVU.MOREX.r3.5HG0507280.1, HORVU.MOREX.r3.7HG0677600.1, HORVU.MOREX.r3.7HG0702360.2, HORVU.MOREX.r3.7HG0720740.1, HORVU.MOREX.r3.7HG0720750.1
Poaceae	Lolium multiflorum	9	gene-QYE76_002729, gene-QYE76_006882, gene-QYE76_008368 ... gene-QYE76_018103, gene-QYE76_029803, gene-QYE76_034997, gene-QYE76_035042, gene-QYE76_057242, gene-QYE76_057256
Poaceae	Oryza coarctata	12	Oco01G027840, Oco02G028940, Oco02G031630, Oco11G012470 ... Oco12G012790, Oco15G001510, Oco16G001620, Oco16G010680, Oco17G012000, Oco18G011960, Oco23G005060, Oco24G004610
Poaceae	Oryza sativa	6	LOC_Os01g68060.1, LOC_Os01g73000.1, LOC_Os06g40650.1 ... LOC_Os08g04130.1, LOC_Os08g38600.1, LOC_Os12g19030.1
Poaceae	Paspalum vaginatum	6	gene-BS78_02G129500, gene-BS78_03G374000 ... gene-BS78_03G409500, gene-BS78_07G034200, gene-BS78_07G175900, gene-BS78_10G188100
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0302964, Pt_Chr0400713, Pt_Chr0400722, Pt_Chr0400751 ... Pt_Chr0402524, Pt_Chr0404006, Pt_Chr0600356, Pt_Chr0600401, Pt_Chr0700536, Pt_Chr0700591, Pt_Chr0703444
Poaceae	Sporobolus alterniflorus	19	Chr02G030000, Chr03G022320, Chr03G023760, Chr04G014460 ... Chr05G007730, Chr05G031350, Chr06G022130, Chr08G018010, Chr08G019640, Chr0G005730, Chr0G024530, Chr0G031250, Chr10G005840, Chr10G017840, Chr11G004760, Chr11G013450, Chr20G000340, Chr20G013290, Chr29G003080
Poaceae	Thinopyrum elongatum	7	Tel3E01G658600, Tel3E01G827900, Tel5E01G202200 ... Tel5E01G588400, Tel7E01G423800, Tel7E01G517800, Tel7E01G646000
Poaceae	Triticum dicoccoides	11	gene_TRIDC3AG058880, gene_TRIDC3AG071480 ... gene_TRIDC3BG065980, gene_TRIDC5AG016350, gene_TRIDC5AG053990, gene_TRIDC7AG030450, gene_TRIDC7AG043040, gene_TRIDC7AG053140, gene_TRIDC7BG021300, gene_TRIDC7BG034360, gene_TRIDC7BG045770
Poaceae	Triticum aestivum	22	TraesCS3A02G414400.2, TraesCS3A02G503300.1 ... TraesCS3A02G503400.1, TraesCS3B02G449200.1, TraesCS3B02G566800.1, TraesCS3D02G408900.1, TraesCS3D02G510000.1, TraesCS5A02G103800.2, TraesCS5A02G368900.1, TraesCS5B02G371300.1, TraesCS5D02G122000.1, TraesCS5D02G378400.2, TraesCS7A02G308900.1, TraesCS7A02G381200.1, TraesCS7A02G381300.1, TraesCS7B02G134400.1, TraesCS7B02G208900.1, TraesCS7B02G283100.1, TraesCS7B02G283200.1, TraesCS7D02G305600.1, TraesCS7D02G377500.1, TraesCS7D02G377600.1
Poaceae	Zea mays	7	Zm00001eb133150_P001, Zm00001eb144000_P002 ... Zm00001eb261900_P001, Zm00001eb276190_P001, Zm00001eb362520_P003, Zm00001eb365180_P001, Zm00001eb386670_P001
Poaceae	Zoysia japonica	6	nbis-gene-11061, nbis-gene-12443, nbis-gene-28416 ... nbis-gene-28417, nbis-gene-31869, nbis-gene-41507
Poaceae	Zoysia macrostachya	8	Zma_g11765, Zma_g23573, Zma_g24299, Zma_g25724, Zma_g29867 ... Zma_g32058, Zma_g33055, Zma_g9224
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.1247, evm.TU.LG01.180, evm.TU.LG04.572 ... evm.TU.LG08.1226, evm.TU.LG14.563, evm.TU.LG18.1489, evm.TU.LG20.391, evm.TU.LG22.135
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g07070, gene.Posoc05g01900, gene.Posoc05g01920 ... gene.Posoc05g07920, gene.Posoc05g18850
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_15_RagTag.802, evm.TU.Scaffold_15_RagTag.803 ... evm.TU.Scaffold_17_RagTag.169, evm.TU.Scaffold_3_RagTag.885, evm.TU.Scaffold_5_RagTag.23, evm.TU.Scaffold_6_RagTag.104
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-10381, nbisL1-mrna-1116, nbisL1-mrna-14925 ... nbisL1-mrna-23164, nbisL1-mrna-26989, nbisL1-mrna-27178, nbisL1-mrna-28960, nbisL1-mrna-9282
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-10652, nbisL1-mrna-13703, nbisL1-mrna-14590 ... nbisL1-mrna-5768, nbisL1-mrna-612, nbisL1-mrna-6716
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10733, nbisL1-mrna-14705, nbisL1-mrna-15597 ... nbisL1-mrna-1909, nbisL1-mrna-6559, nbisL1-mrna-94
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.438, evm.TU.utg000006l.15 ... evm.TU.utg000008l.270, evm.TU.utg000011l.74, evm.TU.utg000013l.121, evm.TU.utg000019l.660
Rhizophoraceae	Kandelia obovata	6	Maker00000989, Maker00002493, Maker00006602, Maker00007858 ... Maker00012763, Maker00013265
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-11222, nbisL1-mrna-11901, nbisL1-mrna-14638 ... nbisL1-mrna-5127, nbisL1-mrna-7030, nbisL1-mrna-9330
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-1407, nbisL1-mrna-15923, nbisL1-mrna-17487 ... nbisL1-mrna-17718, nbisL1-mrna-19715, nbisL1-mrna-6852
Salicaceae	Populus euphratica	12	populus_peu01126, populus_peu06673, populus_peu07689 ... populus_peu10484, populus_peu13677, populus_peu20561, populus_peu21742, populus_peu22837, populus_peu26555, populus_peu28740, populus_peu28755, populus_peu30178
Solanaceae	Lycium barbarum	4	gene-LOC132610700, gene-LOC132621135, gene-LOC132632564 ... gene-LOC132640756
Solanaceae	Solanum chilense	4	SOLCI003283800, SOLCI004182100, SOLCI004278600 ... SOLCI004736500
Solanaceae	Solanum pennellii	4	gene-LOC107011625, gene-LOC107015330, gene-LOC107018467 ... gene-LOC107029366
Tamaricaceae	Reaumuria soongarica	4	STRG.22587_chr10_+, STRG.23286_chr05_+, gene_1611 ... gene_18012
Tamaricaceae	Tamarix chinensis	4	TC01G3548, TC02G1385, TC03G1307, TC04G1093
Zosteraceae	Zostera marina	5	Zosma01g34440.v3.1, Zosma04g01220.v3.1, Zosma05g08290.v3.1 ... Zosma05g11130.v3.1, Zosma06g16400.v3.1