Basic Information
Locus ID:
jg20447
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17761134 | 17762043 | - | jg20447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 24,917.28 Da | 51.60 | 81.83 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 187 | 224 | 8.71715E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 186 | 229 | 5.8E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 232 | 9.42E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 234 | 3.4E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 224 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 225 | 11.66311 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 158 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011096011.1 | uncharacterized protein LOC105175305 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9GM08 | Putative E3 ubiquitin ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology