Basic Information
Locus ID:
jg20305
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 16419225 | 16424562 | - | jg20305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 79,496.09 Da | 44.90 | 95.64 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 69 | 2.6E-4 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 458 | 723 | 2.3E-37 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 1.7E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 237 | 1.17E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 434 | 725 | 2.49E-65 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 534 | 731 | 2.8E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 254 | 1.4E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 427 | 532 | 2.1E-28 | - |
| SMART | SM00369 | LRR_typ_2 | 189 | 211 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 11.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 455 | 729 | 33.756954 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 268 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20850.1 | STRUBBELIG-receptor family 1. | 0 |
| RefSeq | XP_011096273.1 | protein STRUBBELIG-RECEPTOR FAMILY 1 [Sesamum indicum] | 0 |
| Q06BH3 | Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana OX=3702 GN=SRF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UNZ0 | protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Sesamum indicum OX=4182 GN=LOC105175518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology