Basic Information
Locus ID:
jg20294
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 16348061 | 16350753 | + | jg20294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 29,413.67 Da | 54.55 | 80.49 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 102 | 144 | 1.93395E-20 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 102 | 142 | 7.5E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 150 | 1.91E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 156 | 1.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 142 | 6.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 143 | 11.323791 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 115 | 124 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_011096301.1 | E3 ubiquitin-protein ligase RMA1H1-like [Sesamum indicum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UED4 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105175535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology