Basic Information
Locus ID:
jg20280
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 16213323 | 16216484 | - | jg20280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 33,321.16 Da | 33.59 | 90.89 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 168 | 215 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 252 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 85 | 122 | 0.0091 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 260 | 9.94E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 196 | 1.8E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 197 | 255 | 4.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 218 | 259 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 215 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 122 | 0.0069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 131 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 109 | 123 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_011096320.1 | transcriptional corepressor LEUNIG-like [Sesamum indicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U6G4 | transcriptional corepressor LEUNIG-like OS=Sesamum indicum OX=4182 GN=LOC105175551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology