Basic Information
Locus ID:
jg20168
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ABC transporter C family member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14031111 | 14036897 | - | jg20168 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 168,871.64 Da | 40.56 | 104.21 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 342 | 629 | 5.3126E-101 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 5.64777E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 964 | 1237 | 2.08735E-82 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 655 | 857 | 5.40721E-96 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 967 | 1207 | 3.0E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 675 | 809 | 7.4E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 1.3E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 342 | 608 | 1.6E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 653 | 879 | 2.5E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 332 | 640 | 1.28E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 951 | 1238 | 1.57E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1259 | 1501 | 3.1E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1252 | 1505 | 5.9E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 929 | 1245 | 4.6E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 641 | 893 | 2.0E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 318 | 637 | 8.8E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 684 | 857 | 1.8E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1295 | 1480 | 2.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1503 | 18.034012 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 966 | 1232 | 38.623138 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 655 | 880 | 22.975964 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 341 | 621 | 29.357616 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 782 | 796 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 924 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011095521.1 | ABC transporter C family member 3 isoform X1 [Sesamum indicum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8F0ZYW3 | ABC-type xenobiotic transporter OS=Rehmannia glutinosa OX=99300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology